PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910017
Common NameARALYDRAFT_910017
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 252aa    MW: 28158.3 Da    PI: 7.2998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910017genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182070155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  910017 20 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 70
            699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-132070IPR001471AP2/ERF domain
CDDcd000182.13E-332080No hitNo description
PROSITE profilePS5103219.8232178IPR001471AP2/ERF domain
SMARTSM003807.0E-392184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-282179IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-192178IPR016177DNA-binding domain
PRINTSPR003674.1E-82233IPR001471AP2/ERF domain
PRINTSPR003674.1E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA  60
YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS MKQQQQQHKP VSSFADCSIN  120
YTSTATSLTT TTTTTTAMPL NNVYRPDSSV IGQPETDSLQ LPYSWPLVSG FNHQIPLAQG  180
GGEETHGHLN DHYSTDQHLG LAEIERQISA SLYAMNGANS YYDNMNAEYA IFDPTDPIWD  240
LPSLSQLFCP T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-152277359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031040.0AF003104.1 Arabidopsis thaliana AP2 domain containing protein RAP2.11 mRNA, partial cds.
GenBankAY5608540.0AY560854.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g19790) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT29J130.0AF296838.1 Arabidopsis thaliana BAC T29J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873964.10.0hypothetical protein ARALYDRAFT_910017
SwissprotQ6J9S11e-158RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLD7LZB80.0D7LZB8_ARALL; Putative uncharacterized protein
STRINGscaffold_602074.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-131related to AP2 11